usefragsph not on
There are 50 ligand heavy atoms
Ligand center of coords (x y z): 12.97872 22.87324 5.6249
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1223
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 811
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 811
Number of spheres polar: 190, nonpolar: 464, out of current total: 811
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.05428 22.94752 12.92239 30.53395 -4.37264 15.34056
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 270
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 229
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 50
Spheres center of coords (x y z): 12.97872 22.87324 5.6249
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 1.27628275554158
WARNING: removing a crystallographic sphere since 50>45 max spheres are present
WARNING: removing a crystallographic sphere since 49>45 max spheres are present
WARNING: removing a crystallographic sphere since 48>45 max spheres are present
WARNING: removing a crystallographic sphere since 47>45 max spheres are present
WARNING: removing a crystallographic sphere since 46>45 max spheres are present
Final number of output spheres is: 45
Number of polar spheres: 7
Number of nonpolar spheres: 37
Number of spheres that are near neither polar nor nonpolar receptor atoms: 1
Final number of spheres that are from crystallographic ligand: 45