usefragsph not on
There are 56 ligand heavy atoms
Ligand center of coords (x y z): 12.8873928571429 22.7179285714286 5.84644642857143
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1381
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 939
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 939
Number of spheres polar: 186, nonpolar: 518, out of current total: 939
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.89300 22.87562 12.72904 32.49951 -4.08516 15.83630
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 530
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 468
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 454
Spheres center of coords (x y z): 13.0587821365639 21.4527887444934 6.42545167400881
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.47044579013037
Final number of output spheres is: 60
Number of polar spheres: 17
Number of nonpolar spheres: 37
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 56