usefragsph not on
There are 49 ligand heavy atoms
Ligand center of coords (x y z): 40.3154489795918 -0.70195918367347 81.2997551020408
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1691
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 961
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 961
Number of spheres polar: 204, nonpolar: 459, out of current total: 961
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 30.37191 49.95440 -10.45922 9.04428 71.32772 91.29861
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 537
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 453
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 428
Spheres center of coords (x y z): 39.1992341121495 -0.908053971962617 81.2922304906542
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.46709203022639
Final number of output spheres is: 60
Number of polar spheres: 13
Number of nonpolar spheres: 38
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 49