There are 59 ligand heavy atoms Ligand center of coords (x y z): 5.50737288135593 -0.926457627118644 12.8614745762712 useligsph flag does not exist. Starting number of spheres from sph/sph cluster 0: 1457 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 1210 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1208 Number of spheres polar: 284, nonpolar: 558, out of current total: 1208 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.41459 17.36562 -12.91440 11.06032 0.90900 24.81096 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 449 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 367 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 5.50737288135593 -0.926457627118644 12.8614745762712 Center point: 104 xyz: 5.66195 -0.88122 13.79958 After continuity checking, number of spheres is: 338 Spheres center of coords (x y z): 5.2847374852071 -1.73223538461538 11.3666186686391 Not crystallographic ligand, so keeping spheres closest to center of receptor, center of ligand, and center of spheres Receptor center of coords (x y z): 5.19599069003286 1.21843428258489 18.1749786418401 Average weighted-distance for final elimination is: 30.5960493423958 Final number of output spheres is: 120 Number of polar spheres: 41 Number of nonpolar spheres: 55 Number of spheres that are near neither polar nor nonpolar receptor atoms: 24 Final number of spheres that are from crystallographic ligand: 0