usefragsph not on
There are 59 ligand heavy atoms
Ligand center of coords (x y z): 5.50737288135593 -0.926457627118644 12.8614745762712
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1457
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1002
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1002
Number of spheres polar: 216, nonpolar: 519, out of current total: 1002
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.45395 15.43969 -10.87418 9.06700 3.02338 22.85452
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 567
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 494
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 451
Spheres center of coords (x y z): 6.0277867849224 -0.382639490022173 11.5148684922395
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.26807923402379
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 44
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 59