usefragsph not on
There are 58 ligand heavy atoms
Ligand center of coords (x y z): 5.14706896551724 -1.57963793103448 14.3414655172414
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1542
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 892
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 892
Number of spheres polar: 164, nonpolar: 467, out of current total: 892
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.75420 15.13549 -11.57720 8.39692 4.34724 24.32784
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 522
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 466
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 453
Spheres center of coords (x y z): 5.03464028697572 -1.76048145695364 13.1113490066225
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.39669400258454
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 42
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 58