usefragsph not on
There are 58 ligand heavy atoms
Ligand center of coords (x y z): 5.15624137931035 -1.37965517241379 14.2956034482759
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1684
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 928
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 928
Number of spheres polar: 158, nonpolar: 497, out of current total: 928
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.71477 15.12952 -11.32718 8.54881 4.33072 24.27791
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 545
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 479
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 478
Spheres center of coords (x y z): 5.22011485355648 -1.56282610878661 13.312380334728
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.65900208730825
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 41
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 58