usefragsph not on
There are 13 ligand heavy atoms
Ligand center of coords (x y z): 6.55684615384615 0.777230769230769 12.1992307692308
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1245
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 883
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 883
Number of spheres polar: 203, nonpolar: 399, out of current total: 883
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.36500 16.43671 -9.18519 10.72750 2.24832 22.06630
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 501
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 440
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 427
Spheres center of coords (x y z): 6.38327381733021 0.239986721311476 11.45046
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.37547032473235
Final number of output spheres is: 60
Number of polar spheres: 10
Number of nonpolar spheres: 33
Number of spheres that are near neither polar nor nonpolar receptor atoms: 17
Final number of spheres that are from crystallographic ligand: 13