usefragsph not on
There are 39 ligand heavy atoms
Ligand center of coords (x y z): 5.19797435897436 -1.90976923076923 14.2425384615385
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1269
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 838
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 838
Number of spheres polar: 192, nonpolar: 398, out of current total: 838
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.77616 15.09372 -11.90051 8.07192 4.24573 24.10160
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 312
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 262
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 253
Spheres center of coords (x y z): 5.45269138339921 -2.45012146245059 12.0150276679842
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.57359993027283
Final number of output spheres is: 45
Number of polar spheres: 10
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 39