usefragsph not on There are 39 ligand heavy atoms Ligand center of coords (x y z): -9.44174358974359 16.4365384615385 27.8202307692308 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1463 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 747 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 747 Number of spheres polar: 179, nonpolar: 302, out of current total: 747 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.39007 0.55659 6.44738 26.17105 17.90201 37.51441 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 435 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 383 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 366 Spheres center of coords (x y z): -8.9227936885246 15.8604528142076 27.7583202459016 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.54068684397979 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 39