usefragsph not on There are 42 ligand heavy atoms Ligand center of coords (x y z): -9.346 16.240880952381 27.858880952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1452 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 653 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 653 Number of spheres polar: 105, nonpolar: 345, out of current total: 653 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.32241 0.64543 6.35055 26.21255 17.92426 37.84986 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 244 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 215 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 199 Spheres center of coords (x y z): -8.26351964824121 15.7884590954774 27.8803886432161 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.83242420228156 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 42