usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 19.5922368421053 29.6512894736842 13.8656315789474 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1146 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 717 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 717 Number of spheres polar: 179, nonpolar: 383, out of current total: 717 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.61519 29.59141 19.65400 39.64431 3.87059 23.57888 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 414 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 353 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 308 Spheres center of coords (x y z): 19.8794278571429 31.4549475324675 13.4303801948052 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.0395885341014 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 38