Clusters to optimize: Cluster 1: A:GLN 2 Cluster 2: A:GLN 7 Cluster 3: A:GLN 18 Cluster 4: A:GLN 58 A:ASP 60 Cluster 5: A:GLN 61 Cluster 6: A:ASN 83 A:GLU 34 Cluster 7: A:ASN 88 A:ASP 30 A:THR 31 : HG1 Cluster 8: A:GLN 92 Cluster 9: A:ASN 98 A:THR 195 : HG1 A:THR 96 : HG1 A:ASN 197 Cluster 10: A:GLN 101 Cluster 11: A:GLN 106 Cluster 12: A:GLN 117 Cluster 13: A:GLN 157 A:ASP 159 Cluster 14: A:GLN 160 Cluster 15: A:ASN 182 A:GLU 133 Cluster 16: A:ASN 187 A:ASP 129 A:THR 130 : HG1 Cluster 17: A:GLN 191 Cluster 18: A:HID 69 Cluster 19: A:HID 168 Cluster 20: A:THR 4 : HG1 Cluster 21: A:THR 12 : HG1 Cluster 22: A:THR 26 : HG1 A:THR 125 : HG1 Cluster 23: A:SER 37 : HG Cluster 24: A:TYR 59 : HH Cluster 25: A:CYS 67 : HG Cluster 26: A:THR 74 : HG1 Cluster 27: A:THR 80 : HG1 Cluster 28: A:THR 91 : HG1 Cluster 29: A:CYS 95 : HG Cluster 30: A:THR 103 : HG1 Cluster 31: A:THR 111 : HG1 Cluster 32: A:SER 136 : HG Cluster 33: A:TYR 158 : HH Cluster 34: A:CYS 166 : HG Cluster 35: A:THR 173 : HG1 Cluster 36: A:THR 179 : HG1 Cluster 37: A:THR 190 : HG1 Cluster 38: A:CYS 194 : HG Cluster 39: A:GLU 21 Cluster 40: A:ASP 25 A:ASP 124 Cluster 41: A:ASP 29 Cluster 42: A:GLU 35 Cluster 43: A:GLU 65 Cluster 44: A:GLU 120 Cluster 45: A:ASP 128 Cluster 46: A:GLU 134 Cluster 47: A:GLU 164 Working on cluster #1... A:GLN 2 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 2 : No Flip Working on cluster #2... A:GLN 7 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 7 : No Flip Working on cluster #3... A:GLN 18 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 18 : No Flip Working on cluster #4... A:GLN 58 : 2 states A:ASP 60 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: A:GLN 58 : No Flip A:ASP 60 : Charged Working on cluster #5... A:GLN 61 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 61 : No Flip Working on cluster #6... A:ASN 83 : 2 states A:GLU 34 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: A:ASN 83 : No Flip A:GLU 34 : Charged Working on cluster #7... A:ASN 88 : 2 states A:ASP 30 : 3 states A:THR 31 : HG1 : 8 states Scoring exhaustively (48 potential combinations)... Cluster results: A:ASN 88 : No Flip A:ASP 30 : Charged A:THR 31 : HG1 : Orientation 2/8 Working on cluster #8... A:GLN 92 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 92 : No Flip Working on cluster #9... A:ASN 98 : 2 states A:THR 195 : HG1 : 8 states A:THR 96 : HG1 : 8 states A:ASN 197 : 2 states Scoring exhaustively (256 potential combinations)... Cluster results: A:ASN 98 : No Flip A:THR 195 : HG1 : Stagger 1 7/8 A:THR 96 : HG1 : Orientation 5/8 A:ASN 197 : Flip Working on cluster #10... A:GLN 101 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 101 : No Flip Working on cluster #11... A:GLN 106 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 106 : No Flip Working on cluster #12... A:GLN 117 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 117 : No Flip Working on cluster #13... A:GLN 157 : 2 states A:ASP 159 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: A:GLN 157 : No Flip A:ASP 159 : Charged Working on cluster #14... A:GLN 160 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 160 : No Flip Working on cluster #15... A:ASN 182 : 2 states A:GLU 133 : 3 states Scoring exhaustively (6 potential combinations)... Cluster results: A:ASN 182 : No Flip A:GLU 133 : Charged Working on cluster #16... A:ASN 187 : 2 states A:ASP 129 : 3 states A:THR 130 : HG1 : 8 states Scoring exhaustively (48 potential combinations)... Cluster results: A:ASN 187 : No Flip A:ASP 129 : Charged A:THR 130 : HG1 : Orientation 2/8 Working on cluster #17... A:GLN 191 : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:GLN 191 : No Flip Working on cluster #18... A:HID 69 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:HID 69 : HID Working on cluster #19... A:HID 168 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:HID 168 : HID Working on cluster #20... A:THR 4 : HG1 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:THR 4 : HG1 : Orientation 2/6 Working on cluster #21... A:THR 12 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 12 : HG1 : Stagger 2 3/4 Working on cluster #22... A:THR 26 : HG1 : 10 states A:THR 125 : HG1 : 10 states Scoring exhaustively (100 potential combinations)... Cluster results: A:THR 26 : HG1 : Orientation 4/10 A:THR 125 : HG1 : Orientation 3/10 Working on cluster #23... A:SER 37 : HG : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: A:SER 37 : HG : Stagger 3 8/8 Working on cluster #24... A:TYR 59 : HH : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:TYR 59 : HH : Default 2 2/2 Working on cluster #25... A:CYS 67 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:CYS 67 : HG : Stagger 3 5/5 Working on cluster #26... A:THR 74 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 74 : HG1 : Stagger 3 4/4 Working on cluster #27... A:THR 80 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 80 : HG1 : Orientation 3/4 Working on cluster #28... A:THR 91 : HG1 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:THR 91 : HG1 : Orientation 1/6 Working on cluster #29... A:CYS 95 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:CYS 95 : HG : Stagger 2 4/5 Working on cluster #30... A:THR 103 : HG1 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:THR 103 : HG1 : Orientation 2/6 Working on cluster #31... A:THR 111 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 111 : HG1 : Stagger 2 3/4 Working on cluster #32... A:SER 136 : HG : 8 states Scoring exhaustively (8 potential combinations)... Cluster results: A:SER 136 : HG : Stagger 3 8/8 Working on cluster #33... A:TYR 158 : HH : 2 states Scoring exhaustively (2 potential combinations)... Cluster results: A:TYR 158 : HH : Default 2 2/2 Working on cluster #34... A:CYS 166 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:CYS 166 : HG : Stagger 3 5/5 Working on cluster #35... A:THR 173 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 173 : HG1 : Stagger 3 4/4 Working on cluster #36... A:THR 179 : HG1 : 4 states Scoring exhaustively (4 potential combinations)... Cluster results: A:THR 179 : HG1 : Orientation 3/4 Working on cluster #37... A:THR 190 : HG1 : 6 states Scoring exhaustively (6 potential combinations)... Cluster results: A:THR 190 : HG1 : Orientation 1/6 Working on cluster #38... A:CYS 194 : HG : 5 states Scoring exhaustively (5 potential combinations)... Cluster results: A:CYS 194 : HG : Stagger 2 4/5 Working on cluster #39... A:GLU 21 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 21 : Charged Working on cluster #40... A:ASP 25 : 3 states A:ASP 124 : 3 states Scoring exhaustively (9 potential combinations)... Cluster results: A:ASP 25 : Charged A:ASP 124 : Charged Working on cluster #41... A:ASP 29 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 29 : Charged Working on cluster #42... A:GLU 35 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 35 : Charged Working on cluster #43... A:GLU 65 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 65 : Charged Working on cluster #44... A:GLU 120 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 120 : Charged Working on cluster #45... A:ASP 128 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:ASP 128 : Charged Working on cluster #46... A:GLU 134 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 134 : Charged Working on cluster #47... A:GLU 164 : 3 states Scoring exhaustively (3 potential combinations)... Cluster results: A:GLU 164 : Charged Total score for structure: -47.8466281452 Structure extracted from file: rec-protassign.mae Output structure will be written to: rec-protassign-out.mae Complete. Output file: rec-protassign-out.mae