usefragsph not on There are 80 ligand heavy atoms Ligand center of coords (x y z): -9.1903125 15.6269875 27.8880375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1633 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 989 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 989 Number of spheres polar: 209, nonpolar: 514, out of current total: 989 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.04543 0.77573 5.64098 25.59090 16.79700 38.82900 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 343 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 295 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 80 Spheres center of coords (x y z): -9.1903125 15.6269875 27.8880375 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.76779379489039 WARNING: removing a crystallographic sphere since 80>45 max spheres are present WARNING: removing a crystallographic sphere since 79>45 max spheres are present WARNING: removing a crystallographic sphere since 78>45 max spheres are present WARNING: removing a crystallographic sphere since 77>45 max spheres are present WARNING: removing a crystallographic sphere since 76>45 max spheres are present WARNING: removing a crystallographic sphere since 75>45 max spheres are present WARNING: removing a crystallographic sphere since 74>45 max spheres are present WARNING: removing a crystallographic sphere since 73>45 max spheres are present WARNING: removing a crystallographic sphere since 72>45 max spheres are present WARNING: removing a crystallographic sphere since 71>45 max spheres are present WARNING: removing a crystallographic sphere since 70>45 max spheres are present WARNING: removing a crystallographic sphere since 69>45 max spheres are present WARNING: removing a crystallographic sphere since 68>45 max spheres are present WARNING: removing a crystallographic sphere since 67>45 max spheres are present WARNING: removing a crystallographic sphere since 66>45 max spheres are present WARNING: removing a crystallographic sphere since 65>45 max spheres are present WARNING: removing a crystallographic sphere since 64>45 max spheres are present WARNING: removing a crystallographic sphere since 63>45 max spheres are present WARNING: removing a crystallographic sphere since 62>45 max spheres are present WARNING: removing a crystallographic sphere since 61>45 max spheres are present WARNING: removing a crystallographic sphere since 60>45 max spheres are present WARNING: removing a crystallographic sphere since 59>45 max spheres are present WARNING: removing a crystallographic sphere since 58>45 max spheres are present WARNING: removing a crystallographic sphere since 57>45 max spheres are present WARNING: removing a crystallographic sphere since 56>45 max spheres are present WARNING: removing a crystallographic sphere since 55>45 max spheres are present WARNING: removing a crystallographic sphere since 54>45 max spheres are present WARNING: removing a crystallographic sphere since 53>45 max spheres are present WARNING: removing a crystallographic sphere since 52>45 max spheres are present WARNING: removing a crystallographic sphere since 51>45 max spheres are present WARNING: removing a crystallographic sphere since 50>45 max spheres are present WARNING: removing a crystallographic sphere since 49>45 max spheres are present WARNING: removing a crystallographic sphere since 48>45 max spheres are present WARNING: removing a crystallographic sphere since 47>45 max spheres are present WARNING: removing a crystallographic sphere since 46>45 max spheres are present Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 45