usefragsph not on
There are 48 ligand heavy atoms
Ligand center of coords (x y z): 13.067375 22.8375 5.5055
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1337
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 897
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 897
Number of spheres polar: 218, nonpolar: 490, out of current total: 897
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 3.13126 22.95308 12.86800 29.98127 -4.35303 15.39887
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 485
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 422
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 419
Spheres center of coords (x y z): 12.5648979236277 21.065193221957 6.64981102625298
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.93084001215028
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 42
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 48