usefragsph not on There are 51 ligand heavy atoms Ligand center of coords (x y z): -10.0179411764706 14.9204509803922 29.2290980392157 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1522 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 917 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 917 Number of spheres polar: 216, nonpolar: 452, out of current total: 917 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.98116 -0.06852 4.92100 24.77093 19.24973 39.17532 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 512 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 448 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 426 Spheres center of coords (x y z): -9.2488152112676 15.0901072065728 28.1790753755869 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.11820385379023 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 51