usefragsph not on There are 45 ligand heavy atoms Ligand center of coords (x y z): 11.8585111111111 23.1710222222222 5.25355555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1325 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 898 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 898 Number of spheres polar: 205, nonpolar: 455, out of current total: 898 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.87200 21.78113 13.45316 33.07800 -4.68461 15.13134 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 497 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 433 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 415 Spheres center of coords (x y z): 11.5711820722891 22.0207634698795 5.80699081927711 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.87759997737913 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 45