usefragsph not on
There are 45 ligand heavy atoms
Ligand center of coords (x y z): 12.4710666666667 22.7778666666667 5.17797777777778
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1391
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 904
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 904
Number of spheres polar: 206, nonpolar: 492, out of current total: 904
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.50953 22.44944 12.81500 32.66853 -4.81690 15.11779
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 503
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 429
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 413
Spheres center of coords (x y z): 11.6289140920097 21.0861232687651 6.21716644067796
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.2743791616963
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 7
Final number of spheres that are from crystallographic ligand: 45