usefragsph not on
There are 39 ligand heavy atoms
Ligand center of coords (x y z): 5.78353846153846 -1.14712820512821 14.2918205128205
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1236
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 727
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 727
Number of spheres polar: 196, nonpolar: 328, out of current total: 727
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.20835 15.75556 -11.07236 8.82289 4.30806 24.06371
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 279
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 236
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 218
Spheres center of coords (x y z): 5.3024552293578 -2.8642478440367 12.8997866055046
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.34516730058035
Final number of output spheres is: 45
Number of polar spheres: 13
Number of nonpolar spheres: 27
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 39