usefragsph not on There are 46 ligand heavy atoms Ligand center of coords (x y z): -18.960152173913 19.1300869565217 -5.06421739130435 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1374 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 870 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 870 Number of spheres polar: 177, nonpolar: 487, out of current total: 870 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -28.88717 -8.96079 9.16036 29.10423 -14.94951 4.78112 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 298 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 255 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 46 Spheres center of coords (x y z): -18.960152173913 19.1300869565217 -5.06421739130435 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.27752426523013 WARNING: removing a crystallographic sphere since 46>45 max spheres are present Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 45