usefragsph not on There are 44 ligand heavy atoms Ligand center of coords (x y z): 19.8247272727273 29.5881363636364 13.2538181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1176 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 673 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 673 Number of spheres polar: 191, nonpolar: 313, out of current total: 673 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.90441 29.77942 19.60097 39.55500 3.42002 23.07401 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 267 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 226 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 198 Spheres center of coords (x y z): 19.0951494949495 29.7900666161616 11.6936952020202 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.66142528296789 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 44