usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 11.5409117647059 25.4787058823529 5.65770588235294 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1419 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 942 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 942 Number of spheres polar: 209, nonpolar: 453, out of current total: 942 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.54351 21.53883 15.48526 35.32384 -4.29789 15.65688 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 531 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 446 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 424 Spheres center of coords (x y z): 11.5008500471698 23.1457413679245 6.2596329009434 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.75389822880941 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 34