DOCK version 3.5.54, compiled on 20110906 CPU, Date, and Time: node-1-02.c.bkslab.org 21-Dec-11 21:06:02 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dbgen_lig_0004.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1696250 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -14.42400 -18.38400 -3.717999 grid max 26.07600 19.11600 34.78200 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 31 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 10.54844 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 90350 6594 11570 39 23769 0.08 bump 2 90350 10190 1248 39 9576 0.05 bump 3 90350 4567 1215 39 32382 0.04 bump 4 90350 6573 11000 39 21087 0.08 bump 5 90350 6960 1048 39 8370 0.04 bump 6 120634 4492 408 32 90 0.01 bump 7 120634 6949 2304 32 312 0.03 bump 8 120634 2402 2503 32 39 0.03 bump 9 120634 4460 384 32 318 0.02 bump 10 120634 6959 2520 32 1260 0.03 bump 11 120634 2402 4514 32 84 0.04 bump 12 220022 5836 8795 37 1080 0.07 bump 13 220022 1415 478 37 291 0.01 bump 14 220022 3400 48 37 450 0.02 bump 15 191071 6558 7544 39 4446 0.07 bump 16 191071 4487 5 39 25200 0.02 bump 17 191071 6627 5787 39 5463 0.07 bump 18 191071 1310 7194 39 1521 0.03 bump 19 191071 1313 2880 39 1665 0.02 bump 20 191071 6577 1897 39 2304 0.05 bump 21 191071 3536 0 39 8748 0.01 bump 22 191071 6565 7532 39 1728 0.07 bump 23 191071 1310 2855 39 576 0.02 bump 24 191071 1310 2865 39 1170 0.02 bump 25 191071 6601 7653 39 8217 0.07 bump 26 191071 4861 16 39 40392 0.02 bump 27 191071 6613 5793 39 16740 0.06 bump 28 191071 1310 7296 39 1845 0.03 bump 29 191071 1313 8612 39 1350 0.03 bump 30 191071 6595 1924 39 4212 0.05 bump 31 191071 6960 1 39 11664 0.02 bump 32 191071 6604 1920 39 5751 0.06 bump 33 191071 1313 7613 39 567 0.03 bump 34 191071 1310 8245 39 909 0.03 bump 35 219867 5847 4115 34 216 0.06 bump 36 219867 1415 489 34 44 0.01 bump 37 219867 2921 71 34 44 0.02 bump 38 219867 5814 4107 34 276 0.06 bump 39 219867 1415 499 34 44 0.01 bump 40 219867 4094 42 34 44 0.01 bump 41 219867 5836 4112 34 209 0.06 bump 42 219867 1415 469 34 43 0.01 bump 43 219867 6060 79 34 43 0.02 bump 44 219867 5830 6155 34 288 0.06 bump 45 219867 1415 473 34 45 0.01 bump 46 219867 7678 88 34 50 0.03 bump 47 17500 6566 17511 35 1173 0.09 bump 48 17500 5830 30374 35 9594 0.10 bump 49 17500 2960 89 35 2619 0.01 bump 50 17500 0 0 35 2892 0.00 no_match 51 17500 6573 16607 35 1107 0.09 bump 52 17500 5839 26721 35 8262 0.09 bump 53 17500 3326 71 35 2457 0.02 bump 54 17500 0 0 35 2514 0.00 no_match 55 17500 6595 16974 35 1050 0.09 bump 56 17500 5800 26134 35 7350 0.09 bump 57 17500 3549 63 35 2376 0.01 bump 58 17500 0 0 35 2424 0.00 no_match 59 17500 6594 18046 35 1215 0.09 bump 60 17500 5817 30880 35 10668 0.11 bump 61 17500 3799 155 35 2391 0.01 bump 62 17500 0 0 35 2916 0.00 no_match 63 52057 5164 135 43 600 0.02 bump 64 52057 2734 1021 43 78 0.02 bump 65 52057 6940 2367 43 756 0.03 bump 66 52057 5455 3290 43 54 0.05 bump 67 52057 5166 184 43 256 0.02 bump 68 52057 2734 1011 43 32 0.02 bump 69 52057 7641 477 43 96 0.02 bump 70 52057 5452 2648 43 32 0.05 bump 71 94545 7328 0 40 510 0.03 bump 72 94545 4852 12493 40 1704 0.05 bump 73 94545 7706 5476 40 600 0.05 bump 74 94545 7328 0 40 387 0.03 bump 75 94545 4852 12834 40 1566 0.05 bump 76 94545 6480 4336 40 549 0.04 bump 77 94545 7328 0 40 729 0.03 bump 78 94545 6567 17482 40 2634 0.08 bump 79 94545 7013 15347 40 756 2.0 0.07 E 94545 2 3.50 326.19 5.67 -1.24 334.12 80 94545 7328 0 40 843 0.04 bump 81 94545 6567 20753 40 2730 0.09 bump 82 94545 5580 7373 40 948 0.04 bump 83 49553 6612 7697 44 612 0.06 bump 84 49553 5684 7 44 1728 0.02 bump 85 49553 6617 5804 44 639 0.06 bump 86 49553 4479 575 44 1512 0.03 bump 87 49553 4478 2875 44 468 0.04 bump 88 49553 6615 7716 44 576 0.07 bump 89 49553 5684 7 44 1728 0.02 bump 90 49553 6628 5798 44 612 0.06 bump 91 49553 4478 574 44 1728 0.02 bump 92 49553 4409 3190 44 396 0.03 bump 93 49553 6574 7657 44 612 0.06 bump 94 49553 5684 7 44 1728 0.01 bump 95 49553 6610 5786 44 639 0.06 bump 96 49553 4417 640 44 1512 0.03 bump 97 49553 4482 2885 44 468 0.03 bump 98 49553 6573 7612 44 576 0.06 bump 99 49553 5684 7 44 1728 0.02 bump 100 49553 6554 5639 44 612 0.06 bump 101 49553 4416 642 44 1728 0.03 bump 102 49553 4415 3200 44 396 0.04 bump 103 235874 3022 120 29 36 0.01 bump 104 235874 6610 5360 29 15 0.07 bump 105 235874 0 0 29 15 0.00 no_match 106 235874 2304 426 29 7 0.02 bump 107 235874 3381 231 29 24 0.02 bump 108 235874 6574 1893 29 8 0.05 bump 109 235874 631 303 29 16 0.00 bump 110 235874 2300 424 29 6 0.02 bump 111 97151 2465 0 43 11682 0.01 bump 112 97151 2465 0 43 11682 0.01 bump 113 97151 5134 10332 43 14832 0.07 bump 114 97151 2020 2476 43 1566 0.04 bump 115 97151 5594 13923 43 1530 0.07 bump 116 97151 6621 1935 43 6255 0.06 bump 117 97151 4859 869 43 2655 0.04 bump 118 97151 2960 0 43 5760 0.01 bump 119 97151 4961 9666 43 6480 0.06 bump 120 97151 2020 2297 43 639 0.04 bump 121 97151 5586 10836 43 864 0.07 bump 122 97151 2968 0 43 5760 0.02 bump 123 97151 6593 5742 43 6858 0.06 bump 124 97151 7979 18 43 30240 0.03 bump 125 97151 4968 7546 43 13896 0.06 bump 126 97151 2020 2171 43 1485 0.03 bump 127 97151 5573 4623 43 1593 0.06 bump 128 97151 6570 1910 43 14040 0.06 bump 129 97151 3843 0 43 9720 0.02 bump 130 97151 3843 0 43 9720 0.02 bump 131 97151 4971 5355 43 8424 0.06 bump 132 97151 2011 1782 43 1377 0.03 bump 133 97151 5573 10752 43 1125 0.08 bump 134 97151 6598 1917 43 3780 0.06 bump 135 40281 2468 0 34 4860 0.02 bump 136 40281 2465 0 34 4860 0.01 bump 137 40281 0 0 34 891 0.00 no_match 138 40281 6555 1884 34 1512 0.06 bump 139 40281 4827 850 34 648 0.03 bump 140 40281 3381 0 34 1296 0.02 bump 141 40281 0 0 34 648 0.00 no_match 142 40281 3384 0 34 1296 0.01 bump 143 40281 6631 5823 34 1782 0.06 bump 144 40281 7694 3 34 6804 0.04 bump 145 40281 0 0 34 1323 0.00 no_match 146 40281 7660 3 34 6804 0.04 bump 147 40281 7904 7 34 6318 0.03 bump 148 40281 7904 7 34 6318 0.03 bump 149 40281 0 0 34 1161 0.00 no_match 150 40281 6568 5676 34 1620 0.07 bump 151 94545 7621 0 40 729 0.04 bump 152 94545 6607 20443 40 3711 0.09 bump 153 94545 7742 6628 40 969 0.05 bump 154 94545 7621 0 40 600 0.04 bump 155 94545 6607 19968 40 3102 0.09 bump 156 94545 6477 4811 40 957 0.04 bump 157 94545 7621 0 40 966 0.03 bump 158 94545 6607 21378 40 5079 0.09 bump 159 94545 7013 13234 40 1278 0.0 0.06 E 94545 2 6.17 2869.47 8.07 -2.36 2881.36 160 94545 7621 0 40 1266 0.04 bump 161 94545 6607 23008 40 5706 0.09 bump 162 94545 5580 8890 40 1797 0.05 bump 163 271764 5681 3522 36 343 0.03 bump 164 271764 6921 2582 36 5616 0.04 bump 165 271764 2166 13252 36 202 0.04 bump 166 271764 6582 1957 36 1743 0.06 bump 167 271764 5670 3207 36 547 0.03 bump 168 271764 6949 2815 36 8900 0.03 bump 169 271764 2158 15271 36 407 0.05 bump 170 271764 6560 1939 36 4249 0.06 bump 171 283044 4642 449 41 5688 0.02 bump 172 283044 1906 17784 41 367 0.06 bump 173 283044 6941 2096 41 4242 0.03 bump 174 283044 6568 4899 41 257 0.07 bump 175 283044 4655 461 41 2100 0.02 bump 176 283044 1906 17508 41 181 0.05 bump 177 283044 7615 459 41 905 0.02 bump 178 283044 6617 4998 41 181 0.07 bump 179 94545 7323 0 40 501 0.03 bump 180 94545 4813 12625 40 1977 0.05 bump 181 94545 7708 5869 40 528 0.04 bump 182 94545 7323 0 40 441 0.03 bump 183 94545 4813 10121 40 1677 0.05 bump 184 94545 6475 4322 40 537 0.04 bump 185 94545 7323 0 40 666 0.03 bump 186 94545 4813 13233 40 2508 0.05 bump 187 94545 7013 6746 40 729 0.04 bump 188 94545 7323 0 40 699 0.03 bump 189 94545 6600 16809 40 3123 0.08 bump 190 94545 5580 7438 40 951 0.04 bump 191 54912 6557 4899 43 163458 0.07 bump 192 54912 7868 33 43 777600 0.03 bump 193 54912 7179 14019 43 294516 0.10 bump 194 54912 7207 14212 43 362070 0.08 bump 195 54912 6548 1880 43 410427 0.06 bump 196 54912 6583 3865 43 48195 0.06 bump 197 54912 2968 0 43 253692 0.02 bump 198 54912 7146 13833 43 72576 0.08 bump 199 54912 7176 10920 43 107406 0.08 bump 200 54912 2968 0 43 253692 0.01 bump 201 54912 6633 5015 43 89262 0.06 bump 202 54912 7977 37 43 589680 0.02 bump 203 54912 7175 10906 43 76302 0.08 bump 204 54912 7196 6304 43 175608 0.08 bump 205 54912 6556 1893 43 272484 0.06 bump 206 54912 6595 1911 43 48600 0.06 bump 207 54912 5930 0 43 185895 0.02 bump 208 54912 7209 4704 43 84888 0.06 bump 209 54912 7206 11025 43 21384 0.07 bump 210 54912 6568 5683 43 32967 0.06 bump 211 301672 4587 7729 40 1005 0.05 bump 212 301672 9022 4896 40 1113 0.0 0.05 E 301672 2 4.34 295.88 12.75 -5.18 307.79 213 290293 6273 7853 44 3054 0.05 bump 214 290293 4796 4879 44 60372 0.05 bump 215 290293 4858 3479 44 72720 0.04 bump 216 290293 6506 4475 44 10926 0.04 bump 217 11209 5638 3501 30 69 0.04 bump 218 11209 3866 3536 30 432 0.03 bump 219 11209 5425 1344 30 138 0.04 bump 220 11209 3136 1188 30 69 0.03 bump 221 154366 4559 3230 43 61236 0.03 bump 222 154366 6551 11079 43 7047 0.08 bump 223 154366 2813 7469 43 15552 0.03 bump 224 258995 2467 0 42 720 0.02 bump 225 258995 2464 0 42 720 0.01 bump 226 258995 6573 7568 42 315 0.06 bump 227 258995 3455 2261 42 288 0.02 bump 228 258995 6601 1913 42 378 0.05 bump 229 258995 4863 867 42 324 0.04 bump 230 258995 2964 0 42 792 0.02 bump 231 258995 6604 7668 42 180 0.07 bump 232 258995 3455 2600 42 234 0.03 bump 233 258995 2965 0 42 792 0.02 bump 234 258995 4827 854 42 126 0.03 bump 235 258995 7664 1 42 288 0.04 bump 236 258995 6570 1891 42 162 0.05 bump 237 258995 3455 993 42 108 0.02 bump 238 258995 7687 1 42 288 0.04 bump 239 258995 6568 1908 42 1224 0.05 bump 240 258995 3843 0 42 2808 0.01 bump 241 258995 4786 864 42 657 0.04 bump 242 258995 3455 2345 42 270 0.02 bump 243 258995 6595 1919 42 1062 0.05 bump 244 120632 4493 294 33 144 0.02 bump 245 120632 6945 2056 33 162 0.03 bump 246 120632 2045 318 33 42 0.01 bump 247 120632 4493 368 33 72 0.01 bump 248 120632 7613 364 33 48 0.02 bump 249 120632 5738 1620 33 24 0.04 bump 250 235312 3032 138 28 60 0.01 bump 251 235312 6574 5988 28 14 0.06 bump 252 235312 6557 3931 28 12 0.06 bump 253 235312 3386 213 28 24 0.02 bump 254 235312 6567 1899 28 15 0.05 bump 255 235312 2304 419 28 6 0.02 bump 256 17390 6574 3297 23 9 0.07 bump 257 17390 2939 18 23 9 0.01 bump 258 17390 6623 5575 23 12 0.0 0.07 E 17390 2 -11.57 170.09 7.12 -6.42 159.22 259 17390 3340 982 23 12 0.0 0.02 E 17390 3 7.19 1163.29 6.76 -6.61 1170.63 260 17390 6571 6125 23 12 0.0 0.07 E 17390 2 -12.74 218.50 7.06 -6.53 206.28 261 17390 3550 12 23 12 0.02 bump 262 17390 6592 3395 23 9 0.06 bump 263 17390 3566 31 23 9 0.02 bump 264 201853 4493 294 37 144 0.02 bump 265 201853 6941 2048 37 162 0.03 bump 266 201853 981 137 37 42 0.00 bump 267 201853 3160 824 37 63 0.02 bump 268 201853 4493 329 37 42 0.02 bump 269 201853 4120 49 37 63 0.02 bump 270 201853 4613 1929 37 21 0.04 bump 271 201853 4120 49 37 63 0.02 bump 272 219442 5840 4615 33 120 0.05 bump 273 219442 1415 465 33 33 0.01 bump 274 219442 3209 213 33 61 0.02 bump 275 219442 5843 4135 33 336 0.06 bump 276 219442 1415 475 33 45 0.01 bump 277 219442 6735 103 33 45 0.02 bump 278 54593 6617 6148 31 369 0.07 bump 279 54593 7628 2218 31 2160 0.03 bump 280 54593 5797 9213 31 300 0.06 bump 281 54593 6575 7696 31 534 0.06 bump 282 54593 6600 11824 31 66 0.07 bump 283 54593 5972 1548 31 378 0.03 bump 284 54593 5796 10387 31 78 0.06 bump 285 54593 4846 889 31 144 0.04 bump 286 258080 4840 4258 39 60441 0.04 bump 287 258080 6601 14448 39 19962 0.08 bump 288 258080 4810 10444 39 6759 0.06 bump 289 258080 6545 19829 39 4893 0.10 bump 290 94212 2731 0 41 942 0.01 bump 291 94212 6572 15738 41 6429 0.08 bump 292 94212 7710 6692 41 1446 0.06 bump 293 94212 2731 0 41 732 0.01 bump 294 94212 6572 15269 41 4368 0.07 bump 295 94212 6478 4914 41 1215 0.04 bump 296 94212 2731 0 41 1134 0.01 bump 297 94212 6572 15503 41 6231 0.08 bump 298 94212 7191 8254 41 1692 0.05 bump 299 94212 2731 0 41 1425 0.01 bump 300 94212 6572 16613 41 7416 0.08 bump 301 94212 5586 7294 41 2049 0.04 bump 302 120517 4492 357 36 315 0.02 bump 303 120517 6949 2304 36 1080 0.03 bump 304 120517 7185 9168 36 114 0.05 bump 305 120517 4493 368 36 1488 0.02 bump 306 120517 6960 2511 36 3933 0.03 bump 307 120517 7191 3458 36 168 0.06 bump 308 93781 4856 11817 40 5052 0.05 bump 309 93781 4254 0 40 825 0.02 bump 310 93781 7710 6932 40 1305 0.05 bump 311 93781 4856 12080 40 4305 0.05 bump 312 93781 4254 0 40 624 0.01 bump 313 93781 6475 4895 40 1128 0.04 bump 314 93781 6558 16373 40 6780 0.08 bump 315 93781 4254 0 40 1029 0.01 bump 316 93781 7194 9649 40 1626 0.05 bump 317 93781 6558 16767 40 7023 0.08 bump 318 93781 4254 0 40 1221 0.02 bump 319 93781 5580 8382 40 2148 0.05 bump 320 17626 4331 1706 38 393 0.03 bump 321 17626 5823 12576 38 1890 0.06 bump 322 17626 2960 33 38 393 0.01 bump 323 17626 530 841 38 1128 0.01 bump 324 17626 4330 1705 38 405 0.03 bump 325 17626 5833 12327 38 2325 0.06 bump 326 17626 3456 96 38 564 0.02 bump 327 17626 0 0 38 1335 0.00 no_match 328 17626 4336 1680 38 375 0.03 bump 329 17626 5831 12386 38 1920 0.06 bump 330 17626 3549 73 38 555 0.02 bump 331 17626 0 0 38 1308 0.00 no_match 332 17626 4339 1710 38 423 0.03 bump 333 17626 5835 12607 38 2310 0.07 bump 334 17626 3797 68 38 423 0.02 bump 335 17626 0 0 38 1503 0.00 no_match EOF: ../database_link/dbgen_lig_0004.db.gz end of file encountered total minimization steps = 1600 for debugging, time = 19.16000 solvation corrected scores: (a) 1 17390 score: 159.221 nathvy = 23 nconfs = 12 2 17390 score: 206.285 nathvy = 23 nconfs = 12 3 301672 score: 307.794 nathvy = 40 nconfs = 1113 4 94545 score: 334.121 nathvy = 40 nconfs = 756 5 17390 score: 1170.629 nathvy = 23 nconfs = 12 6 94545 score: 2881.359 nathvy = 40 nconfs = 1278 Date and Time: 21-Dec-11 21:06:25 elapsed time (sec): 19.1700