usefragsph not on
There are 46 ligand heavy atoms
Ligand center of coords (x y z): 5.97026086956522 0.328391304347826 12.1961304347826
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1257
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 822
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 822
Number of spheres polar: 167, nonpolar: 379, out of current total: 822
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.96333 15.60303 -9.59949 10.18399 2.20400 20.20576
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 470
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 425
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 404
Spheres center of coords (x y z): 6.4865954950495 1.07296143564356 10.4298846039604
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.64580412326802
Final number of output spheres is: 60
Number of polar spheres: 14
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 46