usefragsph not on There are 41 ligand heavy atoms Ligand center of coords (x y z): 20.1363658536585 -2.72207317073171 18.2965365853658 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1490 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 965 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 965 Number of spheres polar: 183, nonpolar: 474, out of current total: 965 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.23146 30.13121 -12.65240 7.23503 8.49964 28.17203 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 562 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 488 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 483 Spheres center of coords (x y z): 19.6803854037267 -3.20152099378882 19.8034852380952 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.71119872519872 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 41