Distance from surface specified: 1.80 There are 41 ligand heavy atoms Ligand center of coords (x y z): 20.1363658536585 -2.72207317073171 18.2965365853658 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 15795 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 12350 WARNING: removing a crystallographic sphere that is distance 1.84185504315622 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 1.71031956078389 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12174 Number of spheres polar: 6049, nonpolar: 4319, out of current total: 12174 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.15380 34.13360 -16.72180 11.27000 4.29760 32.27820 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1772 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 1039 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 1036 Spheres center of coords (x y z): 20.1498664092664 -4.47567799227799 20.9122976833977 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.8300077666629 Final number of output spheres is: 200 Number of polar spheres: 97 Number of nonpolar spheres: 87 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 39