There are 41 ligand heavy atoms Ligand center of coords (x y z): 20.1363658536585 -2.72207317073171 18.2965365853658 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 15795 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 10172 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 10172 Number of spheres polar: 5194, nonpolar: 3426, out of current total: 10172 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.14560 32.13080 -14.70740 9.21200 6.30400 30.29360 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1482 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 830 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 828 Spheres center of coords (x y z): 20.628988647343 -3.79761111111111 20.7501478260869 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 9.83247560742684 Final number of output spheres is: 120 Number of polar spheres: 60 Number of nonpolar spheres: 49 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 41