usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 143.594727272727 -27.9445 73.7586818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1762 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 905 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 905 Number of spheres polar: 289, nonpolar: 508, out of current total: 905 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 133.63574 153.46494 -37.90669 -17.99102 63.76741 83.68923 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 273 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 218 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 148 Spheres center of coords (x y z): 144.473322972973 -26.3892502027027 70.4779557432432 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.01945492040298 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 22