usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 143.983364090909 -28.4817727272727 74.0803181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2159 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1017 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1017 Number of spheres polar: 286, nonpolar: 616, out of current total: 1017 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 134.05774 153.96906 -38.47678 -18.50779 64.09616 84.07791 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 521 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 434 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 315 Spheres center of coords (x y z): 144.06246215873 -25.5978077777778 71.179672920635 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.75678352098893 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 22