usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 1.6178 -36.27475 24.7882
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1343
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 678
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 678
Number of spheres polar: 219, nonpolar: 401, out of current total: 678
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.35934 11.60888 -46.26284 -26.27949 14.80034 34.61803
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 210
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 169
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 115
Spheres center of coords (x y z): 4.76076513043478 -38.6203191304348 22.059224
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.82156243548429
Final number of output spheres is: 45
Number of polar spheres: 10
Number of nonpolar spheres: 33
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 20