usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -10.0654615384615 141.945575 173.930771923077 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1813 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 847 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 847 Number of spheres polar: 248, nonpolar: 480, out of current total: 847 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.06220 -0.09966 132.02682 151.91351 163.95416 183.90500 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 252 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 190 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 93 Spheres center of coords (x y z): -11.9751530107527 141.501577849462 172.192108494624 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.65442112307375 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 26