usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 143.679653478261 -24.3840869565217 75.3317826086957 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2215 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 941 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 941 Number of spheres polar: 279, nonpolar: 573, out of current total: 941 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 133.69458 153.27620 -34.35572 -14.40144 65.33274 85.31420 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 460 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 384 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 283 Spheres center of coords (x y z): 142.705729222615 -21.2083903886926 71.5135415194346 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.39693535720034 Final number of output spheres is: 60 Number of polar spheres: 9 Number of nonpolar spheres: 50 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 23