usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 142.674088695652 -26.7143913043478 73.3036521739131 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2042 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 957 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 954 Number of spheres polar: 299, nonpolar: 585, out of current total: 954 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 132.67938 152.62599 -36.70900 -16.75416 63.32136 83.29930 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 267 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 215 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 165 Spheres center of coords (x y z): 142.073820969697 -24.998826969697 70.0463243030303 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.47005372316643 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 23