usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -10.1021904761905 143.258238571429 174.538900952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1498 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 727 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 727 Number of spheres polar: 202, nonpolar: 443, out of current total: 727 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.06665 -0.12403 133.25896 153.24251 164.55046 184.52029 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 219 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 178 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 91 Spheres center of coords (x y z): -12.2106251648352 141.690561868132 172.489741098901 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.2148287371493 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 21