usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -10.3966 141.925151 174.646049 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1642 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 895 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 895 Number of spheres polar: 253, nonpolar: 557, out of current total: 895 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -20.38540 -0.50450 131.96278 151.87839 164.65410 184.62976 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 418 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 348 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 234 Spheres center of coords (x y z): -12.4605165811966 139.657829358974 171.588693205128 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.8954548569315 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 20