name of input pdb file: rec.crg name of output contact grid file: solvmap_sev atomic radii (A): 1. for O N C S P Other [1.4 1.3 1.7 2.22.2 1.8]? 1.600000 1.650000 1.900000 1.900000 1.900000 1.600000 2. for water probe (exclusion) [1.4]? 1.400000 number of grid points/angstrom?(1-4) 2 pdb file of limiting box: box assumed ligand atomic radius (A): 1.400000 maximum receptor atomic radius (A): 1.900000 grid resolution (A): 0.5000000 integration cutoff (A): 10.00000 receptor minimum and maximum x y z (A): -41.98900 111.2740 157.0940 20.52900 163.6530 206.7210 box minimum and maximum x y z (A): -32.29100 120.0490 158.3360 12.58900 164.6420 188.3970 dielectric grid expansion size (points/edge) 20 20 9 20 5 20 dielectric grid minimum and maximum x y z (A): -42.29100 110.0490 153.8360 22.58900 167.1420 198.3970 solvation grid x, y, z dimensions: 89 89 60 finished receptor accessible surface finished initializing dielectric grid finished creating receptor molecular surface grid dV is 9.9471835E-03 Precalculating solvmap lookup table Starting solvmap calculation. 1 / 61 the way there! 2 / 61 the way there! 3 / 61 the way there! 4 / 61 the way there! 5 / 61 the way there! 6 / 61 the way there! 7 / 61 the way there! 8 / 61 the way there! 9 / 61 the way there! 10 / 61 the way there! 11 / 61 the way there! 12 / 61 the way there! 13 / 61 the way there! 14 / 61 the way there! 15 / 61 the way there! 16 / 61 the way there! 17 / 61 the way there! 18 / 61 the way there! 19 / 61 the way there! 20 / 61 the way there! 21 / 61 the way there! 22 / 61 the way there! 23 / 61 the way there! 24 / 61 the way there! 25 / 61 the way there! 26 / 61 the way there! 27 / 61 the way there! 28 / 61 the way there! 29 / 61 the way there! 30 / 61 the way there! 31 / 61 the way there! 32 / 61 the way there! 33 / 61 the way there! 34 / 61 the way there! 35 / 61 the way there! 36 / 61 the way there! 37 / 61 the way there! 38 / 61 the way there! 39 / 61 the way there! 40 / 61 the way there! 41 / 61 the way there! 42 / 61 the way there! 43 / 61 the way there! 44 / 61 the way there! 45 / 61 the way there! 46 / 61 the way there! 47 / 61 the way there! 48 / 61 the way there! 49 / 61 the way there! 50 / 61 the way there! 51 / 61 the way there! 52 / 61 the way there! 53 / 61 the way there! 54 / 61 the way there! 55 / 61 the way there! 56 / 61 the way there! 57 / 61 the way there! 58 / 61 the way there! 59 / 61 the way there! 60 / 61 the way there! 61 / 61 the way there! successful completion elapsed time (sec): 1796.1500 Mon Oct 10 10:15:14 PDT 2011 rec.crg solvmap_sev 1.60,1.65,1.90,1.90,1.90,1.60 1.4 2 box 1.4 EOI # receptor file # output grid file # radii of oxygen, nitrogen, carbon, sulfur, phosphorus, and "other" atoms. # radius of probe # grid resolution # box file # born radius of ligand atom