usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -10.0012592592593 142.541888518519 173.708555185185 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2070 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1053 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1053 Number of spheres polar: 332, nonpolar: 607, out of current total: 1053 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -19.99403 -0.01846 132.54237 152.53407 163.72157 183.67868 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 283 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 225 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 163 Spheres center of coords (x y z): -13.1462980981595 139.933431901841 171.070345705521 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.15043590857448 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 27