usefragsph not on
There are 21 ligand heavy atoms
Ligand center of coords (x y z): 1.79528571428571 -37.1641428571428 21.8652380952381
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1400
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 629
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 629
Number of spheres polar: 161, nonpolar: 403, out of current total: 629
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.15869 11.79056 -47.06767 -27.24948 11.88118 31.85396
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 350
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 289
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 198
Spheres center of coords (x y z): 4.25203444444444 -39.4957905555556 19.9978168686869
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.13442007408679
Final number of output spheres is: 60
Number of polar spheres: 9
Number of nonpolar spheres: 47
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 21