usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -1.82804545454545 -34.3948636363636 24.9662727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1969 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1002 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1002 Number of spheres polar: 406, nonpolar: 507, out of current total: 1002 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.76945 8.14530 -44.33875 -24.40075 14.97630 34.90432 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 290 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 234 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 185 Spheres center of coords (x y z): -1.22575183783784 -37.4798738378378 21.9367183783784 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.820812665413 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 22