usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -0.913227272727273 -34.6990454545455 24.1977272727273 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1858 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 881 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 881 Number of spheres polar: 337, nonpolar: 444, out of current total: 881 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.89511 9.07261 -44.69181 -24.71502 14.19947 34.17078 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 458 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 376 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 288 Spheres center of coords (x y z): 0.331798576388889 -36.8913990972222 20.3977610416667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.22971569553686 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 22