usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 144.124218695652 -24.2199130434783 72.6967391304348 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1817 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 955 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 955 Number of spheres polar: 276, nonpolar: 564, out of current total: 955 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 134.13347 154.11118 -34.21154 -14.22124 62.72355 82.68654 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 496 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 418 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 310 Spheres center of coords (x y z): 144.419667258065 -20.3225926451613 69.4036777419355 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.41231316946435 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 23