usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 145.7088804 -24.5596 73.87568 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1787 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1006 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1006 Number of spheres polar: 333, nonpolar: 589, out of current total: 1006 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 135.79118 155.63358 -34.49786 -14.56824 63.88456 83.69670 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 292 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 225 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 193 Spheres center of coords (x y z): 145.383727409326 -22.341969119171 69.7337385492228 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.93369936242322 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 25