usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 144.32112 -24.75692 73.4806 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1884 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1085 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1085 Number of spheres polar: 392, nonpolar: 611, out of current total: 1085 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 134.34355 154.29420 -34.73076 -14.76732 63.50340 83.47021 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 291 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 227 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 168 Spheres center of coords (x y z): 144.478365952381 -21.2929467857143 69.1586019642857 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.20176397897689 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 25