usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 143.34793137931 -26.5075862068965 73.2923103448276 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1702 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 996 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 996 Number of spheres polar: 279, nonpolar: 607, out of current total: 996 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 133.42796 153.32147 -36.48535 -16.57545 63.31471 83.28609 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 299 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 239 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 192 Spheres center of coords (x y z): 144.559928958333 -24.8325822395833 72.1020125 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.9597733727348 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 29