usefragsph not on
There are 23 ligand heavy atoms
Ligand center of coords (x y z): 1.42226086956522 -36.7715217391304 21.7163913043478
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1739
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 738
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 738
Number of spheres polar: 198, nonpolar: 474, out of current total: 738
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.54168 11.39744 -46.53743 -26.79425 11.75207 31.71244
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 219
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 185
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 132
Spheres center of coords (x y z): 4.53630636363637 -38.9884312121212 18.7876778030303
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.50363444854636
Final number of output spheres is: 45
Number of polar spheres: 12
Number of nonpolar spheres: 30
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 23