usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 1.04286363636364 -36.7393636363636 21.1795 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1701 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 757 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 757 Number of spheres polar: 247, nonpolar: 433, out of current total: 757 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.93777 11.03176 -46.70700 -26.74623 11.18243 31.15851 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 413 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 328 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 213 Spheres center of coords (x y z): 4.72555723004695 -38.4408387323944 18.8579120657277 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.2093872419736 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 22