usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 142.807741481481 -26.7287037037037 74.6286666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2242 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1072 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1072 Number of spheres polar: 404, nonpolar: 563, out of current total: 1072 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 132.97820 152.80029 -36.72800 -16.75490 64.63387 84.62246 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 277 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 224 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 160 Spheres center of coords (x y z): 146.1186625625 -27.519003625 76.970238125 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.0627313342965 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 27