usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 2.23613043478261 -36.8553043478261 22.1314347826087 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1940 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 937 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 937 Number of spheres polar: 307, nonpolar: 548, out of current total: 937 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.75512 12.23280 -46.80329 -26.89556 12.14597 32.11441 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 251 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 211 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 163 Spheres center of coords (x y z): 6.21257564417178 -38.7966318404908 19.8155030674847 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.24178781547533 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 23