usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 143.438954545455 -26.2929545454545 75.0443181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1966 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 969 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 969 Number of spheres polar: 323, nonpolar: 540, out of current total: 969 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 133.44273 153.41667 -36.27776 -16.29983 65.10943 85.02641 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 271 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 219 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 165 Spheres center of coords (x y z): 145.062538424242 -26.6850146060606 76.2445503636364 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.98840747546138 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 22