usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 143.438954545455 -26.2929545454545 75.0443181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1966 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 969 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 969 Number of spheres polar: 323, nonpolar: 540, out of current total: 969 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 133.44273 153.41667 -36.27776 -16.29983 65.10943 85.02641 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 459 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 389 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 331 Spheres center of coords (x y z): 144.097698791541 -27.6100435649547 75.1664525075529 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.60154665573501 Final number of output spheres is: 60 Number of polar spheres: 8 Number of nonpolar spheres: 52 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 22